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CRISPResso: Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

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Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

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Motif Independent Metric: Calculates a general and unbiased measure of DNA sequence specificity

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Python Bioutilities: Python library to streamline the analysis of genomics data

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N-Score: Nuclesome/Histone modification prediction based on DNA-sequences

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Multi Layer Model: Nucleosome Prediction based on tiling-microarray data

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